Irregular periods, sudden weight gain, mood swings — it’s easy to see why women sometimes confuse polycystic ovary syndrome (PCOS) with perimenopause. Both can leave you feeling off balance, but they are distinct conditions that require different approaches to diagnosis and care.

Here’s what every woman should know about how the two overlap, how they differ, and why getting the right diagnosis matters.

Key Symptom Differences

Some signs can appear in both conditions:

  • Irregular menstrual cycles
  • Mood swings and anxiety
  • Weight gain (often around the middle)
  • Excess hair growth on areas like the chin
  • Hair thinning on the scalp

But certain symptoms point more clearly to perimenopause:

“Hot flushes, dry skin and vaginal dryness are not part of PCOS — they’re specific to perimenopause,” says reproductive endocrinologist Dr Devini Ameratunga.  “Recognising these differences helps guide whether you’re dealing with a reproductive hormone imbalance like PCOS or the natural hormonal shifts of perimenopause.”

Can PCOS Delay Menopause?

It’s possible, but not guaranteed.

“Women with PCOS often have a higher number of ovarian follicles, which means they may have more oestrogen for longer,” Dr Ameratunga explains. “But menopause ultimately depends on when your egg reserve drops significantly — and that still happens in PCOS towards the end of reproductive life.”

Misdiagnosis Risks

Specialists rarely confuse the two, but mistakes can happen if you’ve been on long-term hormonal birth control.

“PCOS can often go undiagnosed in women who’ve been on the pill for years, because the irregular cycles are masked,” explains Dr Ameratunga. “If you stop taking the pill and notice your periods are irregular, you might assume it’s perimenopause when in fact it could be PCOS.”

Hormone Tests That Help

The hormonal profiles of perimenopause and PCOS are very different.

  • Perimenopause: High FSH, low oestrogen, very low AMH
  • PCOS: High androgens, high AMH, polycystic ovaries on ultrasound

“With perimenopause we don’t always need blood tests to make a diagnosis,” Dr Ameratunga says. “But if they are done, we expect to see high FSH and low oestrogen. In PCOS, the standout features are high AMH and high androgens.”

To diagnose PCOS, at least two of the following are required:

  • Irregular cycles
  • Biochemical or physical signs of high androgens (like acne or hirsutism)
  • Polycystic ovaries on ultrasound

PCOS in Women Over 35

PCOS doesn’t look the same throughout life.

“Symptoms tend to improve with age as the excess follicles naturally die off and cycles can become more regular,” says Dr Ameratunga. “But the long-term risks — diabetes, high blood pressure, and endometrial cancer — become more significant with age, especially if PCOS is not diagnosed or managed.”

This makes ongoing monitoring critical, not just for symptom relief but for protecting overall health as women move into midlife.

Treatment Options in Midlife

PCOS management in midlife looks very similar to earlier years, though the goals often shift.

“Lifestyle remains number one — diet and regular exercise are still the cornerstones of managing PCOS at any age,” says Dr Ameratunga.

Medications can also play a role.

  • Metformin helps women with insulin resistance, especially those with type 2 diabetes risk or fertility concerns.
  • Weight-loss medications, such as GLP1 inhibitors, are emerging as useful tools. “They don’t just support weight loss but may also improve fertility outcomes in PCOS, although the exact mechanism is still being studied,” explains Dr Ameratunga.
  • The pill is often prescribed to regulate cycles, protect the endometrium, and manage symptoms like excessive hair growth and acne.

Hormonal treatments may also be considered depending on symptoms, particularly for irregular bleeding or androgen-related changes.

Fertility Considerations

Women with PCOS may have one advantage in midlife — a higher ovarian reserve.

“In some women with PCOS, having more follicles can preserve ovulation for slightly longer,” says Dr Ameratunga. “But egg quality still declines with age, regardless of PCOS, and that has the biggest impact on fertility.”

Both PCOS and perimenopause complicate ovulation tracking, making it harder to time fertility treatments or even natural conception. For women wanting to conceive, early discussions with a fertility specialist are recommended.

Risks of Missing PCOS in Midlife

Failing to diagnose PCOS in midlife can have serious consequences.

“If PCOS is missed, you lose the chance to prevent long-term risks,” Dr Ameratunga warns. These include:

  • Diabetes and insulin resistance
  • Infertility issues that may otherwise be treated earlier
  • Cardiovascular compromise, such as hypertension and heart disease
  • Endometrial cancer, particularly if cycles remain irregular
  • Psychological challenges, including higher rates of depression

“By the time women reach their 40s, these risks are amplified by age alone,” she adds. “That’s why recognising and managing PCOS is just as important in midlife as it is in the 20s and 30s.”

What GPs Should Look For

A detailed medical history remains the most important starting point. “For PCOS, we’re looking at blood tests for androgens, AMH and diabetes risk, alongside an ultrasound to check ovarian morphology,” explains Dr Ameratunga.

When investigating perimenopause, hormone tests are more revealing. “We usually see high FSH and low oestrogen in peri, whereas PCOS presents with elevated androgens. Thyroid dysfunction should also be excluded, and if menopause occurs earlier than expected, bone density checks are important,” she adds.

These investigations help rule out overlapping or mimicking conditions and ensure that women receive the right treatment and support.

What Women Need to Know in Their 30s and 40s

PCOS isn’t confined to women in their teens or 20s. It can first become apparent later in life.

“PCOS can actually present for the first time in your 30s or 40s, particularly when women come off hormonal contraception and their natural cycles return,” says Dr Ameratunga. “That’s why it’s important not to dismiss irregular periods or new symptoms as simply ‘getting older’ or entering perimenopause.”

The same long-term risks apply regardless of age, including insulin resistance, endometrial changes, cardiovascular disease and psychological impacts. Early recognition and proactive management can reduce these risks and improve overall health outcomes.

© Prevention Australia